WORKSHOP ON IMAGE ANALYSIS AND DATA MANAGEMENT CHALLENGES AND SOLUTIONS

This is an opportunity for core facilities and researchers to present and see ideas, best practices, solutions, and challenges from imaging specialists and those that support data management related to instruments that generate large volumes of imaging data. This workshop will introduce the EnhanceR project as well as support projects that participants of EnhanceR have done or are currently working on. This will be followed by the presentation of solutions and challenges that various imaging platforms and researchers face, and then looking for topics of potential collaboration.

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Time: 13:15 to 17:30, 07.03.2018
Location: Room B-102, UniS, Schanzeneckstrasse 1,  University of Bern (5 mins from Bern main railway station)
Workshop language: English
Number of participants: Max 40
Audience: Developers/IT people supporting imaging/microscopy
Registration: CLOSED
Organisers: Yury Belyaev (UniBE), Stefan Tschanz (UniBE), Aaron Ponti (ETHZ), Sigve Haug (UniBE), Alex Upton (ETHZ), Dean Flanders (FMI)
Fee: Free of charge

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Programme

• 12:00-13:15 Lunch at UniS (optional for those who would like to come earlier to meet with others/individually arranged)

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• 13:15-13:30 Welcome - Sergio Maffioletti (UZH, EnhanceR Project Director)

• 13:30-13:45 EnhanceR: Solving Data Challenges for Researchers in Switzerland - Alex Upton (ETHZ)

• 13:45-14:00 EnhanceR Support Project: Distributed Workflows for Scalable Analysis of Large Imaging Datasets – Henry Lütcke (ETHZ)

 

• 1st session of projects/challenges in imaging chaired by Sigve Haug (UniBe)

  • 14:00-14:30 Data Management in Microscopy - Urs Ziegler (UZH)

  • 14:30-15:00 AutoTx: Automatic Transfer of Data from Microscope Systems to Central Storage - Niko Ehrenfeuchter (UniBas)

 

• 15:00-15:30 Coffee

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• 2nd session of projects/challenges in imaging chaired by Sergio Maffioletti (UZH)

  • 15:30-16:00 Virtual Microscopy Infrastructure for Interactive Histology Courseware - Felix Meyenhofer (UniFr)

  • 16:00-16:30 Image and Data Analysis Pipeline for Modelling and Visualisation of Single-Cell Signalling Dynamics - Maciej Dobrzynski (UniBe)

 

• 16:30-17:00 Discussion of potential collaborations/support from EnhanceR

• 17:00-18:30 Apero and networking

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